Cytoscape test3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 70: | Line 70: | ||
</div> | </div> | ||
<div id="filter_panel"> | <div id="filter_panel"> | ||
<label class="filter">Show edges:</label> | |||
<input type="checkbox" id="cyto_edges_binds_to" checked>TF->MOTIF</input> | |||
<br /><input type="checkbox" id="cyto_edges_promotes" checked>Promoters</input> | |||
<label class="filter">Z-Score filter:</label> | <label class="filter">Z-Score filter:</label> | ||
<table class="slider"> | <table class="slider"> | ||
| Line 75: | Line 80: | ||
<tr valign="bottom"><td id="cyto_zscore_min" >0.00</td><td ><div id="slider1" class="sliderbar"></div></td><td id="cyto_zscore_max">1</td></tr> | <tr valign="bottom"><td id="cyto_zscore_min" >0.00</td><td ><div id="slider1" class="sliderbar"></div></td><td id="cyto_zscore_max">1</td></tr> | ||
<!-- tr><td></td><td valign="top" ><input type="text" id="cyto_zscore_filter_min" value="0" style="float: left; width: 35px;"/> <input type="text" id="cyto_zscore_filter_max" value="100" style="float: right; width: 35px;"/></td><td></td></tr --> | <!-- tr><td></td><td valign="top" ><input type="text" id="cyto_zscore_filter_min" value="0" style="float: left; width: 35px;"/> <input type="text" id="cyto_zscore_filter_max" value="100" style="float: right; width: 35px;"/></td><td></td></tr --> | ||
</table> | </table> | ||
<label class="filter">Show nodes:</label> | <label class="filter">Show nodes:</label> | ||
<input type="checkbox" id="cyto_nodes_tf_src" checked>Source TF</input> <input type="checkbox" id="cyto_nodes_tf" checked>Target TF</input> <input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input> | <input type="checkbox" id="cyto_nodes_tf_src" checked>Source TF (Outdegree = 1)</input> | ||
<br /><input type="checkbox" id="cyto_nodes_tf" checked>Target TF (Outdegree = 0)</input> | |||
<br /><input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input> | |||
</div> | </div> | ||
<div id="properties_panel" style="height: 540px;"> | <div id="properties_panel" style="height: 540px;"> | ||
Revision as of 19:15, 17 May 2012
FF:10717-109I6, TF to Motif to TF network
Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.
Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).
LEGEND: TF 
, MOTIF 
,
MOTIF->TF 
, TF->MOTIF 
