Personal tools

Cytoscape test4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 32: Line 32:
<tr><td></td><td><input type="text" id="cyto_zscore_filter_min" value="0" style="float: left;"/>  <input type="text" id="cyto_zscore_filter_max" value="100" style="float: right;"/></td><td></td></tr>
<tr><td></td><td><input type="text" id="cyto_zscore_filter_min" value="0" style="float: left;"/>  <input type="text" id="cyto_zscore_filter_max" value="100" style="float: right;"/></td><td></td></tr>
</table>
</table>
Show edges: <input type="checkbox" id="cyto_edges_binds_to" checked>TF->MOTIF</input> <input type="checkbox" id="cyto_edges_promotes" checked>TF->MOTIF</input>
Show edges: <input type="checkbox" id="cyto_edges_binds_to" checked>TF->MOTIF</input> <input type="checkbox" id="cyto_edges_promotes" checked>MOTIF->TF</input>
<br />Show nodes: <input type="checkbox" id="cyto_nodes_tf_src" checked>Source TF</input> <input type="checkbox" id="cyto_nodes_tf" checked>Target TF</input> <input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input>
<br />Show nodes: <input type="checkbox" id="cyto_nodes_tf_src" checked>Source TF</input> <input type="checkbox" id="cyto_nodes_tf" checked>Target TF</input> <input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input>
</div>
</div>

Revision as of 10:31, 9 May 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

Cytoscape Web will replace the contents of this div with your graph.

Style

Layout: (recalculate)

Filter

Z-Score filter:
0.00    
  
  0.00
Show edges: TF->MOTIF MOTIF->TF
Show nodes: Source TF Target TF MOTIF

NodeType
Source TFTarget TFPromoterZ-Score