Additional information and matches to known motifs for motif13

Detailed information for motif13

P-value:1e-15
ln P-value:-3.655e+01
Information content per bp:1.528
Number of target sequences with motif:815.0
Percentage of target sequences with motif:42.27%
Number of background sequences with motif:15859.1
Percentage of background sequences with motif:  33.29%
Average position of motif in targets:215.9 +/- 181.1bp
Average position of motif in background:203.9 +/- 122.4bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.39
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

CHR/Cell-Cycle-Exp/Homer

Match rank:  1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CGGTTTAAA----
---TTTGAAACCG
  

MA0218.1_ct

Match rank:  2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CGGTTTAAA
--GTTCAA-
  

TBP_f1_HM09

Match rank:  3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGGTTTAAA---
-GGTATAAATTC
  

MA0108.1_TBP

Match rank:  4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTTTAAA-
NNNNNNCTTTTATAN
  

POL012.1_TATA-Box

Match rank:  5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTTTAAA-
NNNNNNCTTTTATAN