Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 76)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46102)	% of Background Sequences with Motif
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-24	-5.630e+01	0.0000	28.0	36.84%	1175.6	2.55%
RFX2/HOCOMOCO	KGTTGCYAGGSAA	1e-14	-3.348e+01	0.0000	11.0	14.47%	155.6	0.34%
RFX1/HOCOMOCO	GTTGCYAGGGAA	1e-11	-2.706e+01	0.0000	11.0	14.47%	282.3	0.61%
RFX1..5_RFXANK_RFXAP.p2/SwissRegulon	CSGTCGCCATGGCAACVG	1e-8	-1.863e+01	0.0000	12.0	15.79%	800.0	1.73%
RFX3/HOCOMOCO	BGTTGCCATGGTAA	1e-5	-1.351e+01	0.0001	7.0	9.21%	330.6	0.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-4	-1.088e+01	0.0010	8.0	10.53%	688.1	1.49%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-4	-1.004e+01	0.0020	6.0	7.89%	383.7	0.83%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4	-9.789e+00	0.0023	19.0	25.00%	4315.2	9.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-4	-9.439e+00	0.0029	5.0	6.58%	263.7	0.57%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-9.056e+00	0.0038	21.0	27.63%	5374.4	11.65%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-3	-8.383e+00	0.0067	27.0	35.53%	8339.3	18.08%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-8.329e+00	0.0067	13.0	17.11%	2533.5	5.49%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-7.624e+00	0.0121	4.0	5.26%	218.0	0.47%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.128e+00	0.0185	16.0	21.05%	4045.1	8.77%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-6.757e+00	0.0250	14.0	18.42%	3382.6	7.33%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-6.068e+00	0.0467	14.0	18.42%	3639.6	7.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.508e+00	0.0770	8.0	10.53%	1552.1	3.37%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-5.346e+00	0.0856	8.0	10.53%	1595.7	3.46%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.061e+00	0.1077	24.0	31.58%	8797.5	19.08%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-4.983e+00	0.1106	15.0	19.74%	4551.9	9.87%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-4.419e+00	0.1852	25.0	32.89%	9782.9	21.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-4.219e+00	0.2161	12.0	15.79%	3608.9	7.83%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.169e+00	0.2173	8.0	10.53%	1962.5	4.26%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-4.140e+00	0.2173	7.0	9.21%	1590.2	3.45%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.085e+00	0.2175	14.0	18.42%	4582.5	9.94%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.995e+00	0.2286	14.0	18.42%	4634.1	10.05%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.716e+00	0.2909	29.0	38.16%	12539.1	27.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.635e+00	0.3044	6.0	7.89%	1379.9	2.99%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.439e+00	0.3574	4.0	5.26%	725.5	1.57%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.413e+00	0.3574	34.0	44.74%	15657.5	33.95%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.147e+00	0.4477	15.0	19.74%	5684.0	12.32%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.082e+00	0.4628	14.0	18.42%	5236.5	11.35%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.728e+00	0.6394	6.0	7.89%	1726.2	3.74%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.684e+00	0.6488	12.0	15.79%	4547.0	9.86%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.671e+00	0.6488	16.0	21.05%	6588.7	14.29%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.628e+00	0.6488	18.0	23.68%	7678.0	16.65%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.572e+00	0.6669	6.0	7.89%	1799.6	3.90%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.469e+00	0.7196	10.0	13.16%	3723.0	8.07%
Tal1	CATCTG	1e-1	-2.428e+00	0.7308	15.0	19.74%	6293.9	13.65%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.381e+00	0.7469	2.0	2.63%	309.8	0.67%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.366e+00	0.7469	3.0	3.95%	654.2	1.42%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.343e+00	0.7469	6.0	7.89%	1915.5	4.15%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.224e+00	0.8128	12.0	15.79%	4927.0	10.68%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.219e+00	0.8128	4.0	5.26%	1101.5	2.39%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.214e+00	0.8128	3.0	3.95%	700.1	1.52%
PDX1/HOCOMOCO	RGTAATTAG	1e0	-2.212e+00	0.8128	6.0	7.89%	1987.7	4.31%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.127e+00	0.8192	10.0	13.16%	3989.1	8.65%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.115e+00	0.8192	7.0	9.21%	2516.2	5.46%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.092e+00	0.8192	4.0	5.26%	1155.1	2.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.062e+00	0.8214	5.0	6.58%	1612.8	3.50%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.056e+00	0.8214	1.0	1.32%	83.2	0.18%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-1.942e+00	0.8906	30.0	39.47%	15247.0	33.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.911e+00	0.9012	1.0	1.32%	97.4	0.21%
Lmx1b-mouse/UniProbe	VRWWWTTAATTAATWHB	1e0	-1.910e+00	0.9012	2.0	2.63%	412.1	0.89%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.899e+00	0.9012	2.0	2.63%	416.0	0.90%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.836e+00	0.9197	24.0	31.58%	11952.0	25.92%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.831e+00	0.9197	7.0	9.21%	2718.9	5.90%
Lmx1b-mouse/Jaspar	VRWWWTTAATTAATWHB	1e0	-1.829e+00	0.9197	2.0	2.63%	434.3	0.94%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.768e+00	0.9341	10.0	13.16%	4313.6	9.35%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.734e+00	0.9508	3.0	3.95%	878.8	1.91%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.724e+00	0.9508	19.0	25.00%	9282.4	20.13%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.721e+00	0.9508	14.0	18.42%	6513.9	14.12%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.672e+00	0.9630	4.0	5.26%	1364.6	2.96%
Isl2-mouse/Jaspar	MHMAATYAATTAAKWT	1e0	-1.657e+00	0.9630	12.0	15.79%	5501.0	11.93%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.655e+00	0.9630	2.0	2.63%	486.9	1.06%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.598e+00	0.9902	16.0	21.05%	7778.4	16.87%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.592e+00	0.9902	6.0	7.89%	2400.2	5.20%
ISL1/HOCOMOCO	SYTAATG	1e0	-1.560e+00	0.9983	12.0	15.79%	5615.3	12.18%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.546e+00	0.9983	20.0	26.32%	10113.7	21.93%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.535e+00	0.9983	1.0	1.32%	147.8	0.32%
Lmx1a-mouse/Jaspar	CGAWTTAATTAAAAAYY	1e0	-1.509e+00	1.0000	3.0	3.95%	984.6	2.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.501e+00	1.0000	2.0	2.63%	539.4	1.17%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.469e+00	1.0000	3.0	3.95%	1005.3	2.18%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.435e+00	1.0000	3.0	3.95%	1023.4	2.22%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.433e+00	1.0000	3.0	3.95%	1024.9	2.22%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.427e+00	1.0000	8.0	10.53%	3597.7	7.80%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.423e+00	1.0000	1.0	1.32%	167.9	0.36%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.383e+00	1.0000	2.0	2.63%	585.2	1.27%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.374e+00	1.0000	4.0	5.26%	1552.8	3.37%
SeqBias: TA-repeat	TATATATATA	1e0	-1.372e+00	1.0000	24.0	31.58%	12718.7	27.58%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.370e+00	1.0000	5.0	6.58%	2066.0	4.48%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.328e+00	1.0000	10.0	13.16%	4802.3	10.41%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.298e+00	1.0000	6.0	7.89%	2656.3	5.76%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.277e+00	1.0000	7.0	9.21%	3216.5	6.97%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.251e+00	1.0000	5.0	6.58%	2168.3	4.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.246e+00	1.0000	6.0	7.89%	2707.2	5.87%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.245e+00	1.0000	9.0	11.84%	4353.9	9.44%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.234e+00	1.0000	2.0	2.63%	651.1	1.41%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.226e+00	1.0000	4.0	5.26%	1662.7	3.61%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.215e+00	1.0000	10.0	13.16%	4950.3	10.73%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.209e+00	1.0000	2.0	2.63%	663.1	1.44%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.199e+00	1.0000	4.0	5.26%	1684.5	3.65%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.193e+00	1.0000	7.0	9.21%	3309.4	7.18%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.190e+00	1.0000	7.0	9.21%	3313.5	7.18%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.173e+00	1.0000	1.0	1.32%	224.7	0.49%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.081e+00	1.0000	5.0	6.58%	2331.3	5.05%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.080e+00	1.0000	1.0	1.32%	251.8	0.55%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.078e+00	1.0000	5.0	6.58%	2334.1	5.06%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.061e+00	1.0000	2.0	2.63%	742.8	1.61%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.059e+00	1.0000	2.0	2.63%	743.3	1.61%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.037e+00	1.0000	1.0	1.32%	265.4	0.58%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.022e+00	1.0000	1.0	1.32%	270.0	0.59%
LMX1B/HOCOMOCO	WKGMTGTTAATTATTKGYTTC	1e0	-1.019e+00	1.0000	1.0	1.32%	271.5	0.59%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.010e+00	1.0000	1.0	1.32%	274.7	0.60%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.942e-01	1.0000	2.0	2.63%	782.2	1.70%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.846e-01	1.0000	2.0	2.63%	788.1	1.71%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-9.760e-01	1.0000	11.0	14.47%	5887.9	12.77%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.573e-01	1.0000	1.0	1.32%	293.3	0.64%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-9.451e-01	1.0000	7.0	9.21%	3624.0	7.86%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-9.416e-01	1.0000	1.0	1.32%	299.1	0.65%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-9.401e-01	1.0000	7.0	9.21%	3630.5	7.87%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.342e-01	1.0000	2.0	2.63%	821.1	1.78%
PAX6/HOCOMOCO	TCAWGCGTGAA	1e0	-9.237e-01	1.0000	1.0	1.32%	306.0	0.66%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-9.235e-01	1.0000	5.0	6.58%	2506.8	5.44%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-9.128e-01	1.0000	36.0	47.37%	20893.5	45.30%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.063e-01	1.0000	1.0	1.32%	313.3	0.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.965e-01	1.0000	2.0	2.63%	847.7	1.84%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.812e-01	1.0000	2.0	2.63%	858.5	1.86%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.761e-01	1.0000	3.0	3.95%	1421.6	3.08%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.646e-01	1.0000	22.0	28.95%	12622.1	27.37%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-8.501e-01	1.0000	67.0	88.16%	39952.4	86.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.368e-01	1.0000	25.0	32.89%	14490.8	31.42%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.366e-01	1.0000	9.0	11.84%	4961.7	10.76%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.337e-01	1.0000	6.0	7.89%	3203.4	6.95%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-8.259e-01	1.0000	14.0	18.42%	7945.1	17.23%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-8.242e-01	1.0000	1.0	1.32%	349.1	0.76%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-7.908e-01	1.0000	42.0	55.26%	24867.2	53.92%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.868e-01	1.0000	5.0	6.58%	2683.5	5.82%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-7.702e-01	1.0000	6.0	7.89%	3299.3	7.15%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.663e-01	1.0000	14.0	18.42%	8080.9	17.52%
SeqBias: CG bias	SSSSSSSSSS	1e0	-7.653e-01	1.0000	47.0	61.84%	27970.1	60.65%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.279e-01	1.0000	6.0	7.89%	3367.4	7.30%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.276e-01	1.0000	2.0	2.63%	982.2	2.13%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-7.216e-01	1.0000	3.0	3.95%	1582.2	3.43%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.207e-01	1.0000	3.0	3.95%	1583.6	3.43%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.199e-01	1.0000	2.0	2.63%	989.7	2.15%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.165e-01	1.0000	1.0	1.32%	406.0	0.88%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.080e-01	1.0000	11.0	14.47%	6412.6	13.90%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.994e-01	1.0000	3.0	3.95%	1608.0	3.49%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.943e-01	1.0000	1.0	1.32%	418.2	0.91%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.912e-01	1.0000	5.0	6.58%	2825.5	6.13%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-6.828e-01	1.0000	1.0	1.32%	425.6	0.92%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.166e-01	1.0000	6.0	7.89%	3565.7	7.73%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.145e-01	1.0000	1.0	1.32%	470.5	1.02%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.128e-01	1.0000	2.0	2.63%	1096.5	2.38%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-6.096e-01	1.0000	7.0	9.21%	4194.9	9.10%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.089e-01	1.0000	8.0	10.53%	4810.6	10.43%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-5.983e-01	1.0000	2.0	2.63%	1112.3	2.41%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.869e-01	1.0000	2.0	2.63%	1125.5	2.44%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-5.839e-01	1.0000	33.0	43.42%	20116.9	43.62%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.816e-01	1.0000	6.0	7.89%	3634.2	7.88%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-5.797e-01	1.0000	5.0	6.58%	3016.5	6.54%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.612e-01	1.0000	3.0	3.95%	1792.2	3.89%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-5.508e-01	1.0000	7.0	9.21%	4322.6	9.37%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.499e-01	1.0000	4.0	5.26%	2443.2	5.30%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.486e-01	1.0000	9.0	11.84%	5571.0	12.08%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.416e-01	1.0000	1.0	1.32%	526.0	1.14%
Pax6-mouse/UniProbe	TGAYTAATTAATTNAC	1e0	-5.402e-01	1.0000	3.0	3.95%	1824.7	3.96%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.372e-01	1.0000	11.0	14.47%	6841.9	14.84%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.372e-01	1.0000	6.0	7.89%	3727.7	8.08%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.268e-01	1.0000	2.0	2.63%	1198.3	2.60%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-5.252e-01	1.0000	1.0	1.32%	540.2	1.17%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.172e-01	1.0000	1.0	1.32%	547.4	1.19%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.792e-01	1.0000	13.0	17.11%	8261.6	17.91%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.759e-01	1.0000	14.0	18.42%	8894.5	19.29%
pax6-mouse/Jaspar	TGAYTAATTAATTNAC	1e0	-4.736e-01	1.0000	3.0	3.95%	1934.9	4.20%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.704e-01	1.0000	1.0	1.32%	591.4	1.28%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.679e-01	1.0000	2.0	2.63%	1279.6	2.77%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.658e-01	1.0000	3.0	3.95%	1948.1	4.22%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.652e-01	1.0000	3.0	3.95%	1949.4	4.23%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.521e-01	1.0000	3.0	3.95%	1973.2	4.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.499e-01	1.0000	1.0	1.32%	612.0	1.33%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-4.491e-01	1.0000	2.0	2.63%	1307.5	2.83%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.489e-01	1.0000	4.0	5.26%	2638.4	5.72%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.452e-01	1.0000	8.0	10.53%	5224.2	11.33%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-4.427e-01	1.0000	15.0	19.74%	9635.9	20.89%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.315e-01	1.0000	5.0	6.58%	3331.3	7.22%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.278e-01	1.0000	4.0	5.26%	2684.7	5.82%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.238e-01	1.0000	4.0	5.26%	2693.9	5.84%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.225e-01	1.0000	1.0	1.32%	642.1	1.39%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.213e-01	1.0000	2.0	2.63%	1351.4	2.93%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.202e-01	1.0000	4.0	5.26%	2701.5	5.86%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.190e-01	1.0000	1.0	1.32%	646.5	1.40%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.158e-01	1.0000	5.0	6.58%	3370.4	7.31%
PAX6/SwissRegulon	TTCACGCTTGATTT	1e0	-3.898e-01	1.0000	1.0	1.32%	681.7	1.48%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.855e-01	1.0000	3.0	3.95%	2106.4	4.57%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.497e-01	1.0000	2.0	2.63%	1480.6	3.21%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-3.467e-01	1.0000	1.0	1.32%	739.1	1.60%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-3.462e-01	1.0000	2.0	2.63%	1487.0	3.22%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.325e-01	1.0000	1.0	1.32%	760.1	1.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.194e-01	1.0000	4.0	5.26%	2960.6	6.42%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.095e-01	1.0000	2.0	2.63%	1565.9	3.40%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.008e-01	1.0000	5.0	6.58%	3706.0	8.04%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.951e-01	1.0000	2.0	2.63%	1598.2	3.47%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.897e-01	1.0000	1.0	1.32%	830.5	1.80%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.892e-01	1.0000	1.0	1.32%	831.6	1.80%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.869e-01	1.0000	1.0	1.32%	835.4	1.81%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.856e-01	1.0000	76.0	100.00%	45946.6	99.63%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.836e-01	1.0000	28.0	36.84%	18473.5	40.06%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.814e-01	1.0000	1.0	1.32%	845.5	1.83%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.805e-01	1.0000	6.0	7.89%	4460.1	9.67%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.795e-01	1.0000	2.0	2.63%	1636.3	3.55%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-2.656e-01	1.0000	1.0	1.32%	875.1	1.90%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.603e-01	1.0000	10.0	13.16%	7221.9	15.66%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.536e-01	1.0000	1.0	1.32%	899.9	1.95%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.520e-01	1.0000	10.0	13.16%	7263.7	15.75%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.502e-01	1.0000	1.0	1.32%	906.9	1.97%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.354e-01	1.0000	6.0	7.89%	4649.1	10.08%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.244e-01	1.0000	28.0	36.84%	18874.5	40.93%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.134e-01	1.0000	5.0	6.58%	4050.6	8.78%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.096e-01	1.0000	2.0	2.63%	1837.9	3.99%
SeqBias: CA-repeat	CACACACACA	1e0	-2.074e-01	1.0000	34.0	44.74%	22678.2	49.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.063e-01	1.0000	7.0	9.21%	5483.3	11.89%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.992e-01	1.0000	1.0	1.32%	1027.5	2.23%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.927e-01	1.0000	8.0	10.53%	6248.4	13.55%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.809e-01	1.0000	2.0	2.63%	1940.2	4.21%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.766e-01	1.0000	2.0	2.63%	1957.5	4.24%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.762e-01	1.0000	1.0	1.32%	1093.6	2.37%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.631e-01	1.0000	3.0	3.95%	2813.0	6.10%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.606e-01	1.0000	2.0	2.63%	2023.2	4.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.584e-01	1.0000	12.0	15.79%	9192.5	19.93%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.489e-01	1.0000	2.0	2.63%	2076.9	4.50%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.485e-01	1.0000	8.0	10.53%	6544.5	14.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.459e-01	1.0000	1.0	1.32%	1196.9	2.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.430e-01	1.0000	13.0	17.11%	9990.3	21.66%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.410e-01	1.0000	72.0	94.74%	44489.2	96.47%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.404e-01	1.0000	5.0	6.58%	4455.6	9.66%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.301e-01	1.0000	1.0	1.32%	1259.5	2.73%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.251e-01	1.0000	1.0	1.32%	1281.4	2.78%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.174e-01	1.0000	5.0	6.58%	4624.3	10.03%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.089e-01	1.0000	8.0	10.53%	6883.4	14.93%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.074e-01	1.0000	2.0	2.63%	2303.4	4.99%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.068e-01	1.0000	1.0	1.32%	1369.8	2.97%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-9.424e-02	1.0000	2.0	2.63%	2393.0	5.19%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.410e-02	1.0000	8.0	10.53%	7039.2	15.26%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.465e-02	1.0000	1.0	1.32%	1499.3	3.25%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-8.331e-02	1.0000	1.0	1.32%	1508.2	3.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.317e-02	1.0000	2.0	2.63%	2479.5	5.38%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-8.170e-02	1.0000	1.0	1.32%	1519.8	3.30%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.916e-02	1.0000	1.0	1.32%	1613.6	3.50%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.839e-02	1.0000	15.0	19.74%	12248.5	26.56%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-5.855e-02	1.0000	2.0	2.63%	2719.6	5.90%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.366e-02	1.0000	4.0	5.26%	4523.3	9.81%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.026e-02	1.0000	6.0	7.89%	6169.4	13.38%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.288e-02	1.0000	21.0	27.63%	16772.3	36.37%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.100e-02	1.0000	1.0	1.32%	1910.2	4.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.879e-02	1.0000	2.0	2.63%	2998.0	6.50%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-3.311e-02	1.0000	2.0	2.63%	3103.2	6.73%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.259e-02	1.0000	1.0	1.32%	2041.8	4.43%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.532e-02	1.0000	2.0	2.63%	3281.8	7.12%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.197e-02	1.0000	1.0	1.32%	2266.5	4.91%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-2.105e-02	1.0000	74.0	97.37%	45766.1	99.23%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.978e-02	1.0000	1.0	1.32%	2326.8	5.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.640e-02	1.0000	2.0	2.63%	3566.4	7.73%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.458e-02	1.0000	1.0	1.32%	2500.3	5.42%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.194e-02	1.0000	74.0	97.37%	45834.9	99.38%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.487e-03	1.0000	4.0	5.26%	6137.6	13.31%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.023e-03	1.0000	73.0	96.05%	45798.4	99.30%
 Ik-1	NHTTGGGAATRCC	1e0	-1.648e-03	1.0000	76.0	100.00%	46119.5	100.00%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	212.9	0.46%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	0.000e+00	1.0000	0.0	0.00%	892.3	1.93%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	210.5	0.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	714.5	1.55%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	0.0	0.00%	1100.4	2.39%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	0.0	0.00%	409.6	0.89%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	862.3	1.87%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	327.7	0.71%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	69.3	0.15%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	233.9	0.51%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	81.4	0.18%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	48.9	0.11%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	179.7	0.39%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	0.000e+00	1.0000	0.0	0.00%	341.5	0.74%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	257.9	0.56%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	252.3	0.55%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	196.1	0.43%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	145.0	0.31%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	0.0	0.00%	372.2	0.81%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	0.000e+00	1.0000	0.0	0.00%	473.1	1.03%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	0.000e+00	1.0000	0.0	0.00%	472.3	1.02%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	0.000e+00	1.0000	0.0	0.00%	776.0	1.68%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	162.1	0.35%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	0.000e+00	1.0000	0.0	0.00%	233.1	0.51%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	144.0	0.31%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	187.1	0.41%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	195.9	0.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	114.7	0.25%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	168.6	0.37%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	221.3	0.48%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	346.7	0.75%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	66.0	0.14%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	346.7	0.75%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	0.000e+00	1.0000	0.0	0.00%	1325.0	2.87%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	312.9	0.68%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	82.8	0.18%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	310.8	0.67%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	245.8	0.53%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	30.2	0.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	293.4	0.64%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	32.0	0.07%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	0.000e+00	1.0000	0.0	0.00%	413.2	0.90%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	310.1	0.67%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	0.000e+00	1.0000	0.0	0.00%	631.2	1.37%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	147.5	0.32%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	23.4	0.05%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	0.000e+00	1.0000	0.0	0.00%	339.3	0.74%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	31.0	0.07%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	288.3	0.63%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	0.000e+00	1.0000	0.0	0.00%	498.5	1.08%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	0.000e+00	1.0000	0.0	0.00%	450.0	0.98%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	15.0	0.03%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	0.000e+00	1.0000	0.0	0.00%	313.8	0.68%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	36.0	0.08%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	0.0	0.00%	110.7	0.24%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	9.6	0.02%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	0.000e+00	1.0000	0.0	0.00%	848.9	1.84%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	0.000e+00	1.0000	0.0	0.00%	486.4	1.05%
PAX2-long/HOCOMOCO	GHTCAGTCATGCGTGACA	1e0	0.000e+00	1.0000	0.0	0.00%	377.4	0.82%
PAX5/long/HOCOMOCO	VDGDGCASYSAAGCGTGAC	1e0	0.000e+00	1.0000	0.0	0.00%	693.6	1.50%
PAX8/HOCOMOCO	KTVAYTSRMGCRKR	1e0	0.000e+00	1.0000	0.0	0.00%	147.9	0.32%
MA0069.1_PAX6/Jaspar	TTCACGCWTGANTT	1e0	0.000e+00	1.0000	0.0	0.00%	372.4	0.81%
LMX1A/UniProbe	NNTAATWWNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%