Information for motif9


Reverse Opposite:

p-value:1e-6
log p-value:-1.419e+01
Information Content per bp:1.886
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif40.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets84.3 +/- 45.1bp
Average Position of motif in Background95.1 +/- 70.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGATGGACTTT----
NNATTGGACTTTNGNN

MA0598.1_EHF/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGGATGGACTTT
CAGGAAGG-----

MA0114.2_HNF4A/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGGATGGACTTT------
---CTGGACTTTGGACTC

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGGATGGACTTT--------
----TGGACTTTGNNCTNTG

MA0484.1_HNF4G/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGGATGGACTTT-------
----TGGACTTTGNNCTCN

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----AGGATGGACTTT
CTACTAGGATGTNNTN-

MA0136.1_ELF5/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGGATGGACTTT
AAGGAAGTA----

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGATGGACTTT
AGGAAACAGCTG

MA0105.3_NFKB1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGGATGGACTTT---
----GGGAATTTCCC

MA0474.1_Erg/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGATGGACTTT
ACAGGAAGTGG---