Information for motif6


Reverse Opposite:

p-value:1e-8
log p-value:-1.853e+01
Information Content per bp:1.679
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif807.0
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets114.4 +/- 65.0bp
Average Position of motif in Background103.8 +/- 69.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0148.3_FOXA1/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ATGTTTGCWTTG
TCCATGTTTACTTTG

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:ATGTTTGCWTTG
-TGTTTACTTT-

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:ATGTTTGCWTTG
-TGTTTACTTT-

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-ATGTTTGCWTTG----
NSTGTTTRCWCAGBNNN

NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATGTTTGCWTTG---
NNTGTTTATTTTGGCA

MA0047.2_Foxa2/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:ATGTTTGCWTTG-
-TGTTTACTTAGG

MA0042.1_FOXI1/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ATGTTTGCWTTG
GGATGTTTGTTT--

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:ATGTTTGCWTTG
-TGTTTATTT--

MA0041.1_Foxd3/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATGTTTGCWTTG
GAATGTTTGTTT--

MA0481.1_FOXP1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGTTTGCWTTG-
CTTTGTTTACTTTTN