Information for motif4


Reverse Opposite:

p-value:1e-8
log p-value:-2.065e+01
Information Content per bp:1.881
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif7.89%
Number of Background Sequences with motif61.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets67.7 +/- 45.2bp
Average Position of motif in Background101.6 +/- 75.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTGATAAACC
GTCATAAAAN

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GTGATAAACC---
TNAGNTGATCAACCGGT

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTGATAAACC--
AAAGGTAATAAAATTT

MA0465.1_CDX2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTGATAAACC
AAGCCATAAAA-

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTGATAAACC--
TAAGGTAATAAAATTA

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTGATAAACC
NBWGATAAGR-

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTGATAAACC--
GGAGGTCATTAATTAT

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTGATAAACC
-AGATAASR-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GTGATAAACC--
----TAATCCCN

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTGATAAACC-
GGCCATAAATCA