Information for motif3


Reverse Opposite:

p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.825
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif9.21%
Number of Background Sequences with motif90.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets88.0 +/- 47.3bp
Average Position of motif in Background98.0 +/- 66.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0060.2_NFYA/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TCACCAATCAKC-----
TGGACCAATCAGCACTCT

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TCACCAATCAKC
AAATGGACCAATCAG-

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCACCAATCAKC
ACTAGCCAATCA--

PH0107.1_Msx2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCACCAATCAKC---
GAAGACCAATTAGCGCT

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCACCAATCAKC
GYCATCMATCAT-

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCACCAATCAKC
TCATCAATCA--

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCACCAATCAKC
-AGCCAATCGG-

MA0070.1_PBX1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCACCAATCAKC
CCATCAATCAAA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCACCAATCAKC
TGACCT------

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCACCAATCAKC--
TGACCTTTGACCTC