How many bps would be transcribed when we approved aggressive strategy? Jan 25, 2006 To estimate the transcribed regions aggressively, we prepared additional results includes multiple maps (two or more equally best mapping) and longest transcribed regions. Notice: These mapping results are different from Science dataset. * GIS & GSC gis_longest.txt; GIS gsc_longest.txt; GSC When one end was mapped into only one site but the other one was mapped into multiple sites, in conservative way, we should chose shortest one. However, here we chose "longest" (but less than 2.5M) strategy. - tag_sequence - chr - start - stop * mRNA (full-length sequenced) & EST (end sequenced) mRNA_all_best.txt; FANTOM3 & GenBank mRNAs EST_all_best.txt; RIKEN & GenBank ESTs There are two extra columns from psl-style format. - best; number of equally best-scoring mappings for this sequence; always 1 or 2 (mappings are not included in the file if >2 best) - id; a unique numeric id for each mapping * CAGE cage_multiple_best.txt; CAGE There are only multiple mapped tags in this dataset. - rep_tag_id - strand - chr - genome_start_pos - genome_stop_pos - tag_start_pos - tag_stop_pos - identity_value - hits_no - total_hits * Forrest, in aggressive case forrest.txt Using these datasets, 1,772,938,427 bps are transcribed; when we excluded gap regions, 1,717,998,114 bps, about 69.0% in mm5. - chr - start - stop ** Contributors Akira Hasegawa, Par Engstrom and Shintaro Katayama