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The Fantom (Functional Annotation of the mouse) aims at providing the ultimate characterization of the mouse transcriptome. Our strategies are based on the philosophy that progress depends on the combination of technical developments, biological problems and bioinformatics. After the development of original technologies (such as full-length cDNA libraries, CAGE, GSC) followed by massive application, the data have been analyzed by the members of the Fantom-3 consortium. The combination of original RIKEN full-length cDNAs, CAGE tags and GSC ditags allowed providing the most extensive description of any transcriptome so far. These results were summarized in two milestone papers on the September 2, 2005 issue of Science, another milestone one in Nature Genetics, the Genome Network / FANTOM3 article collection in PLoS Genetics, and other sattelites. See the page of the FANTOM3 papers in detail
All data and resources used in this project are available to the community from this page. Please see also the press release text for a more extensive summary of the project, and the databases below.
Announcements
- [Notice] FANTOM servers, including the cDNA viewer and the CAGE databases, will temporarily stop on 22nd October, 2007 (JST)
- FANTOM3 Satellite papers are published in the Genome Network/FANTOM3 article collection in PLoS Genetics [2006.04.28]
- Another milestone paper is published in Nature Genetics. Its supplementary information is avaliable from here. [2006.04.28]
- Photo gallery is updated. [2006.01.27]
- Publishing of two milestone papers (Main and extended press releases on September 1st, 2005)
Databases
- cDNA Annotation ( Annotation strategy )
- Sense/Antisense
- SADB (Archive files in the Sense/Antisense Database)
- CAGE (Cap-Analysis Gene Expression)
- CAGE Basic Viewer (CAGE primary Database)
[mouse | human (current) | human (Previous ver. of September 2005) ]
- CAGE Analysis Viewer (Promoter Database)
[mouse | human (current) | human (Previous ver. of September 2005) ]
- CAGE Tree Viewer (Expression clusters)
[mouse | human ]
- CAGE Basic Viewer (CAGE primary Database)
Joint project
- Genome Network Platform (Genome Network Project)